XB-FEAT-1001094: Difference between revisions
imported>Xenbase →loc100496109: Updated nomenclature, replaced: unnamed → loc100496109 (2) |
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= | =CYP11A1= | ||
This is the community wiki page for the gene ''loc100496109'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''loc100496109'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=protein= | |||
The protein associated with Xtrop GENEID: | |||
is called sterol 26-hydroxylase, mitochondrial [Xenopus tropicalis] | |||
NCBI Reference Sequence: XP_002933985.3 | |||
FASTA | |||
>XP_002933985.3 sterol 26-hydroxylase, mitochondrial [Xenopus tropicalis] | |||
MTGLSSLMHSPRLIRNIQAQLTGTMPSASKLGFLPLGRCRWLLHTGRGVSVSQGRAVAGAAVGAVGEEKK | |||
MKTFEDLPGPSLLTNIYWVFLRGYILYTHELQAIYKKNYGPMWKSTLGRYKTVNIADVDILETVLRQEGK | |||
YPMRSDMEVWKEHRRQRDLSLGPFTEEGHKWHTLRSVLNKRMLKPAEAMLYTGVVNEVVTDFLVRLEEMR | |||
SETPSGDMVNDIPNALYRFAFEGISYILFETRIGCLEKQIPVETQRFIDSIGAMLKNSIFVTIFPPWTNN | |||
LLPYYKRYMDSWDNIFAFGNKLINEKMKKIEARLERDEEVQGEYLTYLISSGKLTDKEIYGSVAELLLAG | |||
VDTTSNTLSWALYHLAREPEIQNALYQEVIGVVPGQNIPTSEDMSSMPLLRAVIKETLRLYPVVPTNSRV | |||
AVEKAITIGDYYFPKDTLIALHHYHISRDEKNFPESDKFIPQRWFRESRVKNNPFSSIPFGYGVRACVGR | |||
RIAELEMHMCLSRIIKKYEVRPDPSGAEIKSMARIVLTPHKPINLRFLPRTPSPSA | |||
=orthology and synteny= | |||
DIOPT/EggNog matches this protein with high confidence to >1700 sequences in >800 species, and the majority of genes/proteiens are called CYP11A1, not 'cyp27a'1 as suggested by the provisional name for loc100496109/XB1001094. | |||
Revision as of 09:28, 17 May 2023
CYP11A1
This is the community wiki page for the gene loc100496109 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
protein
The protein associated with Xtrop GENEID: is called sterol 26-hydroxylase, mitochondrial [Xenopus tropicalis]
NCBI Reference Sequence: XP_002933985.3
FASTA
>XP_002933985.3 sterol 26-hydroxylase, mitochondrial [Xenopus tropicalis] MTGLSSLMHSPRLIRNIQAQLTGTMPSASKLGFLPLGRCRWLLHTGRGVSVSQGRAVAGAAVGAVGEEKK MKTFEDLPGPSLLTNIYWVFLRGYILYTHELQAIYKKNYGPMWKSTLGRYKTVNIADVDILETVLRQEGK YPMRSDMEVWKEHRRQRDLSLGPFTEEGHKWHTLRSVLNKRMLKPAEAMLYTGVVNEVVTDFLVRLEEMR SETPSGDMVNDIPNALYRFAFEGISYILFETRIGCLEKQIPVETQRFIDSIGAMLKNSIFVTIFPPWTNN LLPYYKRYMDSWDNIFAFGNKLINEKMKKIEARLERDEEVQGEYLTYLISSGKLTDKEIYGSVAELLLAG VDTTSNTLSWALYHLAREPEIQNALYQEVIGVVPGQNIPTSEDMSSMPLLRAVIKETLRLYPVVPTNSRV AVEKAITIGDYYFPKDTLIALHHYHISRDEKNFPESDKFIPQRWFRESRVKNNPFSSIPFGYGVRACVGR RIAELEMHMCLSRIIKKYEVRPDPSGAEIKSMARIVLTPHKPINLRFLPRTPSPSA
orthology and synteny
DIOPT/EggNog matches this protein with high confidence to >1700 sequences in >800 species, and the majority of genes/proteiens are called CYP11A1, not 'cyp27a'1 as suggested by the provisional name for loc100496109/XB1001094.