XB-FEAT-876668: Difference between revisions
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Also, removed the human COL11A2P1 as ortholog from this gene page (done) | Also, removed the human COL11A2P1 as ortholog from this gene page (done) | ||
=Orthology and | =Orthology and Synteny= | ||
Synteny shows that these genes are the true orthologs of human COL11A2, and therefore orthologs were moved from XB-GENEPAGE-12564498 to XB-GENEPAGE-876668 | Synteny shows that these genes are the true orthologs of human COL11A2, and therefore orthologs were moved from XB-GENEPAGE-12564498 to XB-GENEPAGE-876668 | ||
Xtr.chr8: | |||
/// s''yngap1.L< LOC100486535(unch) cuta.L> phf1 < slc39a7 < hsd17b8> ring1>//// rxrb> '''col11a2*(was col11a2p1- not a pseudogene)>''' mhc2-dcb< post12< tap1< tap2>'' (*needed model updates on gene page) | /// s''yngap1.L< LOC100486535(unch) cuta.L> phf1 < slc39a7 < hsd17b8> ring1>//// rxrb> '''col11a2*(was col11a2p1- not a pseudogene)>''' mhc2-dcb< post12< tap1< tap2>'' (*needed model updates on gene page) | ||
Xla Chr8L: ''syngap1.L< cuta.L> phf1.L< slc39a7.L< ring1.L> ///LOC100137644(unch|?hmga2)< rxrb.L> mhc-dab.L< mhc-daa.L> LOC108719087(p2rx7-like)< mhc2-dcb.L(eladab-a)< mhc2-dca.L> mhc2-dbb.L< LOC121397044(unch|)< LOC121397045<. mhc2-dba'' | Xla.Chr8L: ''syngap1.L< cuta.L> phf1.L< slc39a7.L< ring1.L> ///LOC100137644(unch|?hmga2)< rxrb.L> mhc-dab.L< mhc-daa.L> LOC108719087(p2rx7-like)< mhc2-dcb.L(eladab-a)< mhc2-dca.L> mhc2-dbb.L< LOC121397044(unch|)< LOC121397045<. mhc2-dba'' | ||
Not present in Xlaevis L sub genome! | Not present in Xlaevis L sub genome! | ||
Xla.Chr8S: | |||
''slc39a7.S < hsd17b8> ring1> rps18.S> wdr46.2> pfdn6.S> tapbp.S< zbtb22.S< LOC100126628(unch|?hmga2)< rxrb.S> '''LOC108700220(col11a2.S)'''> brd.S< mhc2-dma.S'' | ''slc39a7.S < hsd17b8> ring1> rps18.S> wdr46.2> pfdn6.S> tapbp.S< zbtb22.S< LOC100126628(unch|?hmga2)< rxrb.S> '''LOC108700220(col11a2.S)'''> brd.S< mhc2-dma.S'' | ||
Human: chr6: BRD2> HLA-DOA< HLA-DPA1< HLA-DPB1> HLA-DPA2< COL11A2P1< '''COL11A2<''' RXRB< SLC39A7> RING1> | Human: chr6: BRD2> HLA-DOA< HLA-DPA1< HLA-DPB1> HLA-DPA2< COL11A2P1< '''COL11A2<''' RXRB< SLC39A7> RING1> | ||
Revision as of 10:49, 2 October 2023
col11a2
This is the community wiki page for the gene col11a2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
04/22/ 2016
Human name has changed for Entrez Gene: 394214. From collagen, type XI, alpha 2 pseudogene 1 to collagen type XI alpha 2 pseudogene 1
3OCT2023 Renamed gene, changing from col11a2p1 ro col11a2, removing ‘p1’ suffix as these are protein coding genes in Xenopus.
Also, removed the human COL11A2P1 as ortholog from this gene page (done)
Orthology and Synteny
Synteny shows that these genes are the true orthologs of human COL11A2, and therefore orthologs were moved from XB-GENEPAGE-12564498 to XB-GENEPAGE-876668
Xtr.chr8: /// syngap1.L< LOC100486535(unch) cuta.L> phf1 < slc39a7 < hsd17b8> ring1>//// rxrb> col11a2*(was col11a2p1- not a pseudogene)> mhc2-dcb< post12< tap1< tap2> (*needed model updates on gene page)
Xla.Chr8L: syngap1.L< cuta.L> phf1.L< slc39a7.L< ring1.L> ///LOC100137644(unch|?hmga2)< rxrb.L> mhc-dab.L< mhc-daa.L> LOC108719087(p2rx7-like)< mhc2-dcb.L(eladab-a)< mhc2-dca.L> mhc2-dbb.L< LOC121397044(unch|)< LOC121397045<. mhc2-dba
Not present in Xlaevis L sub genome!
Xla.Chr8S: slc39a7.S < hsd17b8> ring1> rps18.S> wdr46.2> pfdn6.S> tapbp.S< zbtb22.S< LOC100126628(unch|?hmga2)< rxrb.S> LOC108700220(col11a2.S)> brd.S< mhc2-dma.S
Human: chr6: BRD2> HLA-DOA< HLA-DPA1< HLA-DPB1> HLA-DPA2< COL11A2P1< COL11A2< RXRB< SLC39A7> RING1>