XB-FEAT-29077066: Difference between revisions
Created page with "=''ccl27''= This is the community wiki page for the ''Xenopus ccl27'' genes, please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =Nomenclature changes= 07OCT2024 ''Xenopus laevis'' gene symbol changed from LOC108718397 to ''ccl27'' ''Xenopus laevis'' gene name changed from ''C-C motif chemokine 28'' to ''C-C motif chemokine 27'' based on conserved synteny with X.tropicalis ccl27, Also note that NC..." |
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This is the community wiki page for the ''Xenopus | This is the community wiki page for the ''Xenopus ccl28'' genes, please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=annotation notes= | |||
07OCT2024 | |||
The ''ccl27'' and ''ccl28'' genes in ''Xtrop and Xlaevis'' had the names switched in the v10 genome annotations. Based on Synteny, and following human gene names/symbols, the C-C motif chemokine ligand 27 genes are those that are flanked by TMEM267, and the C-C motif chemokine ligand 28 genes are flanked by IL11RA, Both genes being on Chr1/1L in ''Xenopus''. | |||
I have tried to get this right on 4th gene pages, with the appropriate names, Gene IDs and gene models , although I will take a fw weeks for all associated dat to move between gene pages. {CJZ} | |||
=Nomenclature changes= | =Nomenclature changes= | ||
Revision as of 11:44, 9 October 2024
ccl28
This is the community wiki page for the Xenopus ccl28 genes, please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
annotation notes
07OCT2024
The ccl27 and ccl28 genes in Xtrop and Xlaevis had the names switched in the v10 genome annotations. Based on Synteny, and following human gene names/symbols, the C-C motif chemokine ligand 27 genes are those that are flanked by TMEM267, and the C-C motif chemokine ligand 28 genes are flanked by IL11RA, Both genes being on Chr1/1L in Xenopus.
I have tried to get this right on 4th gene pages, with the appropriate names, Gene IDs and gene models , although I will take a fw weeks for all associated dat to move between gene pages. {CJZ}
Nomenclature changes
07OCT2024
Xenopus laevis gene symbol changed from LOC108718397 to ccl27
Xenopus laevis gene name changed from C-C motif chemokine 28 to C-C motif chemokine 27 based on conserved synteny with X.tropicalis ccl27, Also note that NCBI ID as the Xtrop gene as the ortholog of human CCL27.