XB-FEAT-977930: Difference between revisions
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=''eml2''= | =''eml2''= | ||
This is the community wiki page for the gene ''eml2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''eml2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
25FEB2025 | 25FEB2025 | ||
We have looked at | We have looked at annatation of the ''eml1'' and ''eml2'' genes on Xenbase, following RSCOM-702 issue raised og RefSeq. | ||
Note | Note that all ''Xenopus'' genes are on the chr8/8L/8S. | ||
Based on synteny, it is clear that the ''X.tropicalis'' gene IDs and gene models need to be moved to the alternate gene page, and the ''X.laevis'' so called 'eml1.S' is also misnamed/misplaced, and is in fact the ''eml2.S'' paralog. | Based on synteny, it is clear that the ''X.tropicalis'' gene IDs and gene models need to be moved to the alternate gene page, and the ''X.laevis'' so called 'eml1.S' is also misnamed/misplaced, and is in fact the ''eml2.S'' paralog. The gene models and NBCI gene ID have been moved to the correct places, with gene page names and orthologs staying in place. | ||
Resolution below: | Resolution below: | ||
| Line 14: | Line 13: | ||
1) XB-GENEPAGE-949778 has 3 Chr8/8L/8S genes: | 1) XB-GENEPAGE-949778 has 3 Chr8/8L/8S genes: | ||
XB-GENE-949779 : Xtr. eml1 | XB-GENE-949779 : Xtr. eml1 GeneID:100495318 | ||
XB-GENE-17332034 Xla.eml1.L | XB-GENE-17332034 Xla.eml1.L GeneID:108698775 | ||
XB-GENE-949784: eml1.S | XB-GENE-949784: eml1.S GeneID: 108699781 | ||
2) XB-GENEPAGE-977930 also has 3 Chr8/8L/8S genes | 2) XB-GENEPAGE-977930 also has 3 Chr8/8L/8S genes | ||
XB-GENE-977931 Xtr.eml2 | XB-GENE-977931 Xtr.eml2 GeneID:548488 | ||
XB-GENE-6252125 Xla.eml2.L | XB-GENE-6252125 Xla.eml2.L GeneID:414712 | ||
XB-GENE-17346283 Xla.eml2.S | XB-GENE-17346283 Xla.eml2.S GeneID:495344 | ||
Revision as of 18:57, 17 June 2025
eml2
This is the community wiki page for the gene eml2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase 25FEB2025
We have looked at annatation of the eml1 and eml2 genes on Xenbase, following RSCOM-702 issue raised og RefSeq.
Note that all Xenopus genes are on the chr8/8L/8S.
Based on synteny, it is clear that the X.tropicalis gene IDs and gene models need to be moved to the alternate gene page, and the X.laevis so called 'eml1.S' is also misnamed/misplaced, and is in fact the eml2.S paralog. The gene models and NBCI gene ID have been moved to the correct places, with gene page names and orthologs staying in place.
Resolution below:
1) XB-GENEPAGE-949778 has 3 Chr8/8L/8S genes:
XB-GENE-949779 : Xtr. eml1 GeneID:100495318
XB-GENE-17332034 Xla.eml1.L GeneID:108698775
XB-GENE-949784: eml1.S GeneID: 108699781
2) XB-GENEPAGE-977930 also has 3 Chr8/8L/8S genes
XB-GENE-977931 Xtr.eml2 GeneID:548488
XB-GENE-6252125 Xla.eml2.L GeneID:414712
XB-GENE-17346283 Xla.eml2.S GeneID:495344