XB-FEAT-29096946: Difference between revisions
Created page with "=''atraid''= This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase." |
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=''atraid''= | =''atraid''= | ||
This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=orthology & synteny notes= | |||
Synteny and BLAST support the true ATRAID orthologs in ''Xenopus'' as those on Chr.5/5S. THese models are here on XB-GENEPAGE-29096946. | |||
In ''X.laevis_ chr5S: _ppm1g< nrbp1> '''atraid'''< cad> uncn1> trim54<'' | |||
In ''X. laevis'' 5L: no gene model in v10 | |||
In ''X. tropicalis chr5: ppm1g< nrbp1> LOC> krtcap3> ift172< '''atraid<''' LOC< LOC< LOC< cad> mpv17> ucn> trim54<'' | |||
human: PRR30< TCF23> SLC5A6< '''ATRAID'''> CAD> SLC30A3< DNAJC5G> | |||
The 2nd '''atraid''' gene in ''Xenopus'' occurs on Xtr.chr8. | |||
I have renamed this "atraid-like" (''atraidl, all-trans retinoic acid induced differentiation factor like'') (although autocorrect would like to make it afraid, which has its charm). | |||
The protein sequence/BLAST does identify this chr8 pc gene as a true ATRAID member. If it occurs in other vertebrates, I have suggested to NCBI's David Webb that we might be able to sname it '''''atraid2'''''. | |||
Revision as of 13:08, 6 May 2026
atraid
This is the community wiki page for the gene atraid please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
orthology & synteny notes
Synteny and BLAST support the true ATRAID orthologs in Xenopus as those on Chr.5/5S. THese models are here on XB-GENEPAGE-29096946.
In X.laevis_ chr5S: _ppm1g< nrbp1> atraid< cad> uncn1> trim54<
In X. laevis 5L: no gene model in v10
In X. tropicalis chr5: ppm1g< nrbp1> LOC> krtcap3> ift172< atraid< LOC< LOC< LOC< cad> mpv17> ucn> trim54<
human: PRR30< TCF23> SLC5A6< ATRAID> CAD> SLC30A3< DNAJC5G>
The 2nd atraid gene in Xenopus occurs on Xtr.chr8.
I have renamed this "atraid-like" (atraidl, all-trans retinoic acid induced differentiation factor like) (although autocorrect would like to make it afraid, which has its charm).
The protein sequence/BLAST does identify this chr8 pc gene as a true ATRAID member. If it occurs in other vertebrates, I have suggested to NCBI's David Webb that we might be able to sname it atraid2.