XB-FEAT-976339: Difference between revisions
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= | =''c1qtnf8''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''c1qtnf8'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature & annotation updates= | |||
11MAY2026 | |||
''Xenopus'' gene nomenclature was updated to follow the names of human orthologs as assessed by NCBI, changing from ''c1qtnf1, C1q and TNF related 1'' to ''c1qtnf8, C1q and TNF related 8''. | |||
This is supported by synteny, and appears to have been a misidentified loci in the NCBI's v10 ''X. tropcailis'' genome annotation, which Xenbase adopted. | |||
'''synteny:''' | |||
''X. tropicalis CHR9: sox8> sstr5> LOC#< LOC#> '''c1qtnf8'''< [string of LOCs<<<<>]'' | |||
Human: SOX8> SSTR5> '''CIQTNF8'''< | |||
VERSUS | |||
''X.tropicalis chr10: timp2< cant1> engase< rbfox3>'' (no ''c1qtnf1'' model!!) | |||
Xlaevis chr9_10L: foxrb3.L> engase.L> cant1.L> timp2.L>. ( no X.laevis ''c1qtnf1'' model here either) | |||
human: CANT1< '''C1QTNF1'''> ENGASE> | |||
Latest revision as of 19:41, 11 May 2026
c1qtnf8
This is the community wiki page for the gene c1qtnf8 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature & annotation updates
11MAY2026
Xenopus gene nomenclature was updated to follow the names of human orthologs as assessed by NCBI, changing from c1qtnf1, C1q and TNF related 1 to c1qtnf8, C1q and TNF related 8.
This is supported by synteny, and appears to have been a misidentified loci in the NCBI's v10 X. tropcailis genome annotation, which Xenbase adopted.
synteny:
X. tropicalis CHR9: sox8> sstr5> LOC#< LOC#> c1qtnf8< [string of LOCs<<<<>]
Human: SOX8> SSTR5> CIQTNF8<
VERSUS
X.tropicalis chr10: timp2< cant1> engase< rbfox3> (no c1qtnf1 model!!)
Xlaevis chr9_10L: foxrb3.L> engase.L> cant1.L> timp2.L>. ( no X.laevis c1qtnf1 model here either)
human: CANT1< C1QTNF1> ENGASE>