XB-FEAT-484571

carm1

This is the community wiki page for the gene carm1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

genome annotation notes

31JAN2023

XB had 2 gene pages called ‘’carm1’’

XB-GENEPAGE-6072890 ( not much data) Xtr (Chr1) and Xla.L(chr3)

Change name to ‘’carm1l, coactivator associated arginine methyltransferase 1-like’’

XB-GENEPAGE-484571 ( with literature and images)  Xtr, Xla.S model on Chr3 = true carm1

Request MOVE of Xla.carm.L models from XB-GENEPAGE-6072890 to XB-GENEPAGE-484571

synteny of Xenopus carm1 v carm1l

‘’Xenopus carm1’’

Xtr carm1 chr3: dnm2> … tmed1< … LOC10173343>… carm1> ….ylpf2< … timm29> Loc100495666> smarca4>

Compared with Xenopus ‘’carm1-like’’

Xtr.carm1l chr1: crygbl.1> … crygbl.2> … LOC100496840<(likely another crygb) … carm1l> …pum> … kcnv2< … vldlr<

Xla.S scaffold58on v9.2: vldir.S> … kcnv2.S> … pum3 …carm1l … Xetrov(unch) <….. upstream string of crygb’s

Looked in v10 Xlaevis assembly to see if we could find a v10 model for  XB-GENEPAGE-484571- but no!

Xla V10 chr1.L (no model):

pum3.L> …LOC121401372(lncRNA)< … kcnv2.L< … vldir.L< … smarca2.L< … LOC#5489(pseudo) … LOC121394124(dmrt2.2)< … dmrt2.L> … dmrt3.L< … dmrt 1.L …

Xla.chr1S: (no v 10 model):

pum3.S> …. LOC108704909(lncRNA)< … kcnv2.S< … vldir.S< … LOC432089(snf2l2) <… LOC108704897(UNCH ncRNA) … dmrt2.S< dmrt3.S< … dmrt 1.S< …