XB-FEAT-29082318

lonrf4

This is the Xenbase community wiki page for the Xenopus lonrf4 genes. Please feel free to record here any inofrmation about these genes that is not captured elsewhere on Xenbase.

nomenclature changes

05FEB2025

following an anlysis by ZFIN and NCBIs refSeq team, XB-GENE-29082319 was renamed.

Changing from LOC100494722, to lonrf4.

Xenopus lonrf4is orthologous to zebrafish GeneID: 560773 ( ZDB-GENE-101021-4) whose name has recently been updated to lonrf4/'LON peptidase N-terminal domain and ring finger 4'. This gene has been lost in mammals.

synteny patterns across taxa

05FEB2025 from David Webb at NCBI

Human NP_689484

SGCZ> DLC1> TRMT9B< LONRF1> FAM86B2> DEFB130A> FAM86B1>. ARL9< SRP72< PAICS< PPAT> AASDH>

koala, marsupials

SGCZ> DLC1> TRMT9B< PRAG1< ARL9< SRP72< PAICS< PPAT> AASDH>

echidna XP_038625053.1

SGCZ> DLC1> TRMT9B< LONRF1> paics< PPAT> AASDH>

chicken XP_040527393.1, turtle XP_037753631.1

SGCZ> DLC1> TRMT9B< LONRF1> PAICS< PPAT> AASDH>

Xtropicalis XP_002934710.2

SGCZ> dlc1> DLC1> trmt9b< LONRF1> PPAT> PAICS.1< PAICS.2< AASDH>

coelacanth XP_006000234.1

//DLC1> trmt9b< LONRF1> pcais< PPAT> thap10< AASDH>

lungfish XP_043918430.1

SGCZ> DLC1> TRMT9B< LONRF1> PAICS< PPAT> AASDH>

reedfish XP_051783772.1

sgcz> g2e3> DLC1> trmt9b< LONRF1> PAICS< PPAT> AASDH>

gar XP_015200921.1

SGCZ> DLC1> LONRF1> PAICS< paics< PPAT> AASDH>

tetra XP_007237027.3, teleosts

JAK3> b3gnt3< vldlr< lonrf1> CABP4< DOC2D> SERPING1<

Dr NP_001264163 ZFIN mistakenly calls this "lonrf1l" (ZDB-GENE-081104-397)

B3GNT3< vldlr< pimr166> lonrf-like> vldlr< LOC> pimr166> lonrf1> CABP4< DOC2D> SERPING1<

carcharodon shark XP_041047126.1

sgcz> DLC1> trmt9b< LONRF1> PAICS< PPAT> AASDH>

elephant shark XP_042196851.1

SGCZ> DLC1> LONRF1> PAICS< paics< PPAT> AASDH>