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  • 12:41, 28 March 2024XB-FEAT-29097510 (hist | edit) ‎[3,445 bytes]Xenbase (talk | contribs) (Created page with "=''pgla.4''= This is the Xenbase wiki page for ''Xenopus'' ''pgla.4'' genes. Please record here anything that is not captured elsewhere on Xenbase. =Nomenclature updates= 28MARCH2024 The ‘’Xenopus’’ ‘’pgla’’ genes on Chr6/6L/6S, a cluster of tadem uncharacterized proteins, were assessed by Xenbase curators. Based on synteny, protein alignment and phylogenetic analysis, the following provisional gene nomenclature was decided upon. Note that in the v10...")
  • 12:41, 28 March 2024XB-FEAT-29097506 (hist | edit) ‎[3,445 bytes]Xenbase (talk | contribs) (Created page with "=''pgla.5''= This is the Xenbase wiki page for ''Xenopus'' ''pgla.5'' genes. Please record here anything that is not captured elsewhere on Xenbase. =Nomenclature updates= 28MARCH2024 The ‘’Xenopus’’ ‘’pgla’’ genes on Chr6/6L/6S, a cluster of tadem uncharacterized proteins, were assessed by Xenbase curators. Based on synteny, protein alignment and phylogenetic analysis, the following provisional gene nomenclature was decided upon. Note that in the v10...")
  • 08:27, 28 March 2024XB-FEAT-29091430 (hist | edit) ‎[3,479 bytes]Xenbase (talk | contribs) (Created page with "=''pgla.3''= This is the Xenbase wiki page for the ''Xenopus pgla.3'' genes. Feel free to record here any information about this genes that is not captured else where on Xenbase. =nomenclature changes= 28March2024 Following a quick assessment of the v10 NCBI annotation for X. laevis on chr6L, there appears to be a duplication of 3 ''pgla'' genes. Xla.chr6L: ulk4.L< trak1.L> '''LOC121394631.L(‘pgla-like’)< LOC780753.L(‘pgla.S’)< pgla.L<''' pgq.L< >levi.L...")
  • 08:24, 28 March 2024XB-FEAT-6492177 (hist | edit) ‎[3,492 bytes]Xenbase (talk | contribs) (Created page with "=''pgla''= This is the Xenbase wiki page for the ''Xenopus'' ''pgla'' genes. Feel free to record here any information about this genes that is not captured else where on Xenbase. =nomenclature changes= 28March2024 Following a quick assessment of the v10 NCBI annotation for X. laevis on chr6L, there appears to be a duplication of 3 ''pgla'' genes. Xla.chr6L: ulk4.L< trak1.L> '''LOC121394631.L(‘pgla-like’)< LOC780753.L(‘pgla.S’)< pgla.L<''' pgq.L< >levi.L...")
  • 08:13, 28 March 2024XB-FEAT-22067945 (hist | edit) ‎[3,479 bytes]Xenbase (talk | contribs) (Created page with "=''pgla.2''= This is the Xenbase wiki page for the Xenopus genes ''pgla.2''. Feel free to records here any information about these genes that is not captured elsewhere on Xenbase. =nomenclature changes= 28MARCH2024 In the v10 ''X.laevis'' NCBI annotation, this gene was incorrectly called ''pgla.S'', but it '''is placed on chromosome 6L'''. Synteny and the NCBI annotation name is as a prepro-PGLa, and as it falls adjacent to other prepro-PGLa genes, we have given it...")
  • 10:00, 14 March 2024XB-FEAT-29098766 (hist | edit) ‎[392 bytes]Xenbase (talk | contribs) (Created page with "=''LOC116412415'' = This is the community wiki page for ''LOC116412415''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =annotation notes= 13MARCH2024 Xenbase curators updated the gene name for this protein, from uncharacterized to 'myb DNA binding protein 5', after searching for orthologs groups (OG) in DIOPTs EggNogg6.0 tool.")
  • 07:19, 14 March 2024XB-FEAT-29082598 (hist | edit) ‎[707 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k1.2''= This is the community wiki page for ''cyp2k1.2''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12March2024 'Xenopus'' gene name changed from ''LOC100495200'' to ''cyp2k1.2'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated genes, and new gene...")
  • 07:16, 14 March 2024XB-FEAT-29081046 (hist | edit) ‎[761 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2g1''= This is the community wiki page for ''cyp2g1''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12March2024 'Xenopus'' gene name changed from ''LOC100492165, putative inactive cytochrome P450 2G1'' to ''cyp2g1, cytochrome P450 2G1'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature...")
  • 07:10, 14 March 2024XB-FEAT-29082542 (hist | edit) ‎[708 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k1.3''= This is the community wiki page for ''cyp2k1.3''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12March2024 'Xenopus'' gene name changed from ''LOC100494424'' and ''XB5870673'' to ''cyp2k1.7'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated ge...")
  • 13:26, 13 March 2024XB-FEAT-29080474 (hist | edit) ‎[727 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k6.1''= This is the community wiki page for ''cyp2k6.1''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 03.12.2024 'Xenopus'' gene name changed from ''LOC108716384'' and ''LOC100490986'' to ''cyp2k6.1'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated...")
  • 13:19, 13 March 2024XB-FEAT-29080766 (hist | edit) ‎[710 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k4.2''= This is the community wiki page for ''cyp2k4.2''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12March2024 'Xenopus'' gene name changed from LOC100491603(cyp2k4) to ''cyp2k4.2'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated genes, and new g...")
  • 13:12, 13 March 2024XB-FEAT-29086002 (hist | edit) ‎[715 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k1.4''= This is the community wiki page for ''cyp2k1.4''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12.03.2024 'Xenopus'' gene name changed from LOC101732279 (cyp2k1-like) to ''cyp2k1.4'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated genes, and...")
  • 13:09, 13 March 2024XB-FEAT-29082450 (hist | edit) ‎[716 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k1.5''= This is the community wiki page for ''cyp2k1.5''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12March2024 'Xenopus'' gene name changed from LOC100494900 (cyp2k1-like) to ''cyp2k1.5'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated genes, and...")
  • 13:05, 13 March 2024XB-FEAT-29082322 (hist | edit) ‎[715 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k1.6''= This is the community wiki page for ''cyp2k1.6''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomeclature changes= 12March2024 'Xenopus'' gene name changed from LOC100494741 (cyp2k1-like) to ''cyp2k1.6'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes. ''Xenopus'' nomenclature rules were applied for duplicated genes, and...")
  • 11:51, 13 March 2024XB-FEAT-29089578 (hist | edit) ‎[730 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k6.5''= =nomenclature changes= This is the community wiki page for ''cyp2k6.5''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenlcature changes= 12March2024 'Xenopus'' gene name changed from ''LOC105947503'' and ''LOC10871722'' to ''cyp2k6.5'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes, where Xenopus nomenclature rules w...")
  • 11:38, 13 March 2024XB-FEAT-29081950 (hist | edit) ‎[713 bytes]Xenbase (talk | contribs) (Created page with "=''cyp2k6.3''= This is the community wiki page for ''cyp2k6.3''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12MARCH2024 'Xenopus'' gene name changed from ''LOC100493928'' to ''cyp2k6.3'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes, where ''Xenopus'' nomenclature rules were applied for duplicated genes, and ne...")
  • 11:35, 13 March 2024XB-FEAT-29082174 (hist | edit) ‎[709 bytes]Xenbase (talk | contribs) (Created page with "=cyp2k6.4= This is the community wiki page for ''cyp2k6.4''. Feel free to record here any information relevant to this gene that is not captured elsewhere on Xenbase. =nomenclature changes= 12MARCH2024 ''Xenopus'' gene name changed from ''LOC100494435'' to ''cyp2k6.4'' following a assessment of synteny for this region of chr5/5L/5S, which contains are cluster of 30 cytochrome p450 genes, where Xenopus nomenclature rules were applied for duplicated genes, and new gene...")
  • 11:46, 11 March 2024XB-FEAT-22251716 (hist | edit) ‎[170 bytes]Xenbase (talk | contribs) (Created page with "=''klc4''= This is the community wiki page for the ''Xenopus'' 'klc4'' genes. Feel free to record here any relevant information that is not captured elsewhere on Xenbase.")
  • 14:43, 7 March 2024XB-FEAT-29099390 (hist | edit) ‎[954 bytes]Xenbase (talk | contribs) (Created page with "=''sdcbp2''= This is the Xenbase wiki page for ''sdcbp2''. Feel free to record here any information not captured elsewhere on Xenbase. =nomenclature changes= =synteny= 05MAR2024 Xtrop: chr10: rv: ''pdyn>. nsfl1c>. fkbp1a> '''sdcbp2'''< snph< tmem74b> psmf1< fam110a<'' Xla.chr9_10L: ''pdyn.L> nsfl1c.L> LOC(lncRNA)< fkbp1a.L>. '''MGC52622'''> snph.L< tmem74b.L> psmf1.L< fam110a.L< scrt2.L>'' Xla.S: ''pdyn.S> nsfl1c.S> fkbp1a.S> snph.S< LOC> fam110a.S<. tmem74b...")
  • 13:17, 7 March 2024XB-FEAT-29081014 (hist | edit) ‎[3,647 bytes]Xenbase (talk | contribs) (Created page with "=uncharacterized genes LOC108700137 and LOC100492077= =synteny= Human. X: SLC25A43> SLC25A5> '''STEEP1'''< UBE2A> NKRF< SEPTIN6< ''Xtrop chr8: slc25a43> slc25a5> '''LOC100492077'''> ube2a> nkrt< nkap>'' ''Xla v10 8L: slc25a43.L> slc25a5.L> ... ube2a.L> nkrf.L< septin6.L<'' ''Xla v10 chr8S: LOC# slc25a5.S> '''LOC108700137'''> ube2a.S>. nkrf.S<'' Notes from synteny: ** the gene is NOT PRESENT IN XLA.L sub genome, although LOC108700137 and LOC100492077...")
  • 14:14, 4 March 2024XB-FEAT-29093330 (hist | edit) ‎[571 bytes]Xenbase (talk | contribs) (Created page with "=''gp2l''= This is the community wiki page for the gene ''gp2l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 04MAR2024 ''Xenopus'' gene name updated from the non-informative LOC#s to ''gp2l, pancreatic secretory granule membrane major glycoprotein GP2 like'' Note that the v9 Xla L gene model (Calle dLOC101733023) lacked an NCBI/Entrez gene ID, while the v10 model (Gene...")
  • 09:13, 7 February 2024XB-FEAT-29209259 (hist | edit) ‎[360 bytes]Xenbase (talk | contribs) (Created page with "=gfod3= There was an assigned model for an ''X. laevis'' ''gfod3.S'' gene but this clashed both in model ID and NCBi gene ID with the ''tp73.S'' gene. Subsequent investigation faored the ''tp73.S'' gene assignment so the model and NCBI gene associateion were removed from ''gfod3.S''. (2/7/2024)")
  • 15:32, 5 February 2024XB-FEAT-29079722 (hist | edit) ‎[426 bytes]Xenbase (talk | contribs) (Created page with "=''gucy2dl''= This is the Xenbase wiki page for the ''Xenopus gucy2dl'' gene(s). Please feel free to record here any relevant information that is not captured elsewhere on Xenbase. =nomenclature changes= 05FEB2024 ''Xenopus'' gene symbol change from LOC100489435 to ''gucy2dl''. Note that true ''gucy2d'', the ortholog of the human GUCY2D gene, is on chromosome 3 in ''X. tropicalis'', and this ''like'' gene is on Chr2.")
  • 12:41, 24 January 2024XB-FEAT-29099062 (hist | edit) ‎[1,271 bytes]ABell (talk | contribs) (Created page with "=''naip.3''= This is the community wiki page for the gene ''naip.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 24JAN2024 The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''. '''''X. tropicalis''''' - ''olcn''> ''gtf2h2...")
  • 12:39, 24 January 2024XB-FEAT-29091370 (hist | edit) ‎[1,267 bytes]ABell (talk | contribs) (Created page with "=''naip''= This is the community wiki page for the gene ''naip'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 24JAN2024 The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''. '''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> '...")
  • 12:52, 23 January 2024XB-FEAT-29085226 (hist | edit) ‎[799 bytes]ABell (talk | contribs) (Created page with "=nlrp3l= This is the community wiki page for the gene ''nlrp3l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 23JAN2024 Gene symbol changed from ''LOC101731251'' to ''nlrp3l'' to reflect that it is like the NLRP3 genes in humans, while we work out the specific family and member number of this particular gene in an ongoing review of NLR type genes. Also the ''X. laevis'' L subgen...")
  • 07:03, 8 January 2024XB-FEAT-22041699 (hist | edit) ‎[9 bytes]Xenbase (talk | contribs) (Created page with "=fim-a.1=")
  • 08:30, 3 January 2024XB-FEAT-29209255 (hist | edit) ‎[1,045 bytes]Xenbase (talk | contribs) (Created page with "=nfil3l.2= This is the Xenbase wiki page for the ''Xenopus nfil3l.2'' genes. Please feel free to record here any information about these genes that is not captured elsewhere on Xenbase. =nomenclature changes= 01JAN2024 The ''Xenopus laevis nfil3l.2.L'', nuclear factor interleukin 3 regulated like gene 2 [NCBI GeneID: 447503] is on Chr4L, [v10 gene model: XBXL10_1g19722] and has been placed here on its own gene page. We can not find any paralogous ''nfil3l.2'' gene...")