XB-FEAT-22065720: Difference between revisions
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Predicted to enable G protein-coupled receptor activity and photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; digestive system; eye; heart; and testis. [provided by Alliance of Genome Resources, Apr 2022] | Predicted to enable G protein-coupled receptor activity and photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; digestive system; eye; heart; and testis. [provided by Alliance of Genome Resources, Apr 2022] | ||
=nomenclature notes= | |||
18OCT2023 | |||
The ''X. tropicalis'' v10 gene model was previously called LOC116411750, ''opsin5-like''. | |||
Synteny and BLASt confirm that it is in fact the ''opsin 7 alpha'' paralog, and is being added to this gene page, and renamed ''opsin 7a''. | |||
=synteny= | |||
''Xtrop. chr6: ttr> b4galt6< '''LOC116411750<''' trappc8< rnf125>'' | |||
''Xla.chr6L: ttr.l> b4galt6.L< '''opn7a.L<''' trappc8.L< rnf125.L>'' | |||
''Xla.6S: ttr.S> b4galt6.S< trappc8.S<'' | |||
Note that there is no Xla.S model . | |||
Revision as of 12:11, 18 October 2023
opn7a
This is the community wiki page for the Xenopus opn7a genes. Please feel free to record here, any relevant information that is not recorded elsewhere on Xenbase.
summary from NCBI
Predicted to enable G protein-coupled receptor activity and photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; digestive system; eye; heart; and testis. [provided by Alliance of Genome Resources, Apr 2022]
nomenclature notes
18OCT2023
The X. tropicalis v10 gene model was previously called LOC116411750, opsin5-like.
Synteny and BLASt confirm that it is in fact the opsin 7 alpha paralog, and is being added to this gene page, and renamed opsin 7a.
synteny
Xtrop. chr6: ttr> b4galt6< LOC116411750< trappc8< rnf125>
Xla.chr6L: ttr.l> b4galt6.L< opn7a.L< trappc8.L< rnf125.L>
Xla.6S: ttr.S> b4galt6.S< trappc8.S<
Note that there is no Xla.S model .