XB-FEAT-5852382: Difference between revisions

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=alg13=  
=alg13l=  
This is the community wiki page for the gene ''alg13'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
This is the community wiki page for the gene ''alg13l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
 
= Nomenclature changes=
This gene was assessed by David Webb at NCBI 11.27.2019
 
XB-GENEPAGE-5852382  symbol and name has changed from ''alg13'' to ''alg13l'', UDP-N-acetylglucosaminyltransferase subunit-like.
 
Xtr. GeneID: 549862 and Xla, Gen Id 431927  are  ag13l resides in this pattern TAT>... ...CHST4>..."'''ALG13'''">...ATXN1L>...ZNF821<...IST1> on chromosome 4.
Note that it will take some time for the alg13 to be renamed alg13l in the Xtrop. v10.7 genome build.
 
ALSO Note that ag13l seems to be unique to ''Xenopus'', as ''Nanorana parkeri'' and caecilians seem to lack this gene.
 
Based on synteny the true alg13 ortholog is Xtr GeneID: 100145625, which consistently resides in this pattern in tetrapods: PAK3>...CAPN6<...DCX<...'''ALG13'''>...TRPC5>...  ...LHFPL1< on chromosome 1.
 
The true ''alg13'' gene page was created with this Xenbase accession: XB-GENEPAGE-22172431, with gene name: ALG13, UDP-N-acetylglucosaminyltransferase subunit, and symbol ''alg13''

Latest revision as of 07:31, 12 December 2019

alg13l

This is the community wiki page for the gene alg13l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

Nomenclature changes

This gene was assessed by David Webb at NCBI 11.27.2019

XB-GENEPAGE-5852382 symbol and name has changed from alg13 to alg13l, UDP-N-acetylglucosaminyltransferase subunit-like.

Xtr. GeneID: 549862 and Xla, Gen Id 431927 are ag13l resides in this pattern TAT>... ...CHST4>..."ALG13">...ATXN1L>...ZNF821<...IST1> on chromosome 4. Note that it will take some time for the alg13 to be renamed alg13l in the Xtrop. v10.7 genome build.

ALSO Note that ag13l seems to be unique to Xenopus, as Nanorana parkeri and caecilians seem to lack this gene.

Based on synteny the true alg13 ortholog is Xtr GeneID: 100145625, which consistently resides in this pattern in tetrapods: PAK3>...CAPN6<...DCX<...ALG13>...TRPC5>... ...LHFPL1< on chromosome 1.

The true alg13 gene page was created with this Xenbase accession: XB-GENEPAGE-22172431, with gene name: ALG13, UDP-N-acetylglucosaminyltransferase subunit, and symbol alg13