XB-FEAT-22065613: Difference between revisions
(Created page with "=''sprtn3''= This is the community wiki page for the gene ''sprtn3'', please feel free to add any information that is relevant to this gene that is not already captured elsewh...") |
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GENE SYMBOL CHANGED FROM ''XB22065613 [provisional:sprtn]'' TO ''sprtn3'' | GENE SYMBOL CHANGED FROM ''XB22065613 [provisional:sprtn]'' TO ''sprtn3'' | ||
both gene name and symbol are (provisional) awaiting HGNC/NCBI Ref Seq approval. | |||
=synteny= | |||
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8. | |||
Human chr 1: RNA5SP80< ... EXOC8< ... '''SPRTN'''> ...LOC107985360> ... EGLN1< ...LOC122152336> | |||
X. laevis chr5.S: sf3b5.S< ... exoc8.S< ...tsnax.S< ... egln1.S< .. '''sprtn.S'''> ... acta1.S< ... LOC108717893< ... | |||
the 2 other ''X. tropicalis'' genes have been given provisional names ''sprtn2''[geneID: 105945677) and ''sprtn3'' [geneID: 105948375] | |||
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... ''''''sprtn2''''''> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ... | |||
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... ''''''sprtn3''''''< ... LOC#3326> ... LOC#3470 ... | |||
Revision as of 10:35, 5 January 2023
sprtn3
This is the community wiki page for the gene sprtn3, please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomeclature changes
05JAN2023
GENE NAME CHANGED FROM provisional ortholog of SprT-like N-terminal domain TO SprT-like N-terminal domain 3
GENE SYMBOL CHANGED FROM XB22065613 [provisional:sprtn] TO sprtn3
both gene name and symbol are (provisional) awaiting HGNC/NCBI Ref Seq approval.
synteny
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8.
Human chr 1: RNA5SP80< ... EXOC8< ... SPRTN> ...LOC107985360> ... EGLN1< ...LOC122152336>
X. laevis chr5.S: sf3b5.S< ... exoc8.S< ...tsnax.S< ... egln1.S< .. sprtn.S> ... acta1.S< ... LOC108717893< ...
the 2 other X. tropicalis genes have been given provisional names sprtn2[geneID: 105945677) and sprtn3 [geneID: 105948375]
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... 'sprtn2'> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ...
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... 'sprtn3'< ... LOC#3326> ... LOC#3470 ...