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Logs
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  • 19:35, 17 April 2026 Xenbase talk contribs created page XB-FEAT-29229405 (Created page with "= ''gsg1l''= THis is teh Xenbase wiki page for the ''Xenopus gsg1l'' genes. Feel free to record here any information relevant to these genes that is not recprded elsewhere on Xenbase. =nomenclature updates and synteny= 17APR2026 These are the true ''gsg1l'' ortholog, resideing on a Xtr.chr9 and Xla.9L locus corresponding to GeneID: 100485075 based on conserved synteny and BLASTp. The X.laevis gsg1l homeolog is thus GeneID:108701879 on chr 9_10L . I couldn't find an...")
  • 21:01, 16 April 2026 Xenbase talk contribs created page XB-FEAT-29077514 (Created page with "=nomenclature changes= 17APR2026 ''Xenopus '' genes have been renamed, changing from '''LOC100145789, uncharacterized LOC100145789'' to ''selenoi2, selenoprotein I2'' following review by NCBI refSeq curator, David Webb. XB-GENEPAGE-29077514 can be updated to SELENOI2/ 'selenoprotein I2' [and note this isn't selenoprotein 12 but rather is letter i 2 (I2)] so that an informative official symbol is assigned for Gene ID:100145789 (Xtr) and Xla.L (GeneID:108719241).Tha...")
  • 20:42, 15 April 2026 Xenbase talk contribs created page XB-FEAT-29098714 (Created page with "=''mul1''= =nomenclature changes= 13APR2026 ''Xenopus'' gene name changed from ''LOC116412398, mitochondrial ubiquitin ligase activator of nfkb 1-like'' to ''mul1, mitochondrial E3 ubiquitin protein ligase 1'' following assessemtn by NCBi RefSeq curators. In looking at these loci, it is actually GeneID:116412398 (XB-GENE-29098715) which is the ortholog of human MUL1, not GeneID: 100487584 (XB-GENE-5884886). These two loci are in tail-to-tail configuration. The gen...")
  • 15:53, 15 April 2026 Xenbase talk contribs created page XB-FEAT-29080258 (Created page with "=lhb= =nomenclature updates= 16APR2026 ''Xenopus'' gene name changed from ''LOC100490615, lutropin subunit beta-like'' to ''lhb, luteinizing hormone subunit beta''. LOC100490615 (GeneID: 100490615, XP_002939281.1, XB-GENE-29080259) and lhb (GeneID: 100038205, XP_002939280.1, XB-GENE-486113). These two genes are adjacent to each other. human: GYS1< RUVBL2> '''LHB< SAXO3<''' CGB8< CBG2> XTROP: gys1<. ''''lhb'> loc100490615>''' ruvbl2< Xlav.L: gys1.L<. ruvbl2.L>...")
  • 14:26, 15 April 2026 Xenbase talk contribs created page XB-FEAT-29080154 (Created page with "=''cpo''= This si the Xenbase community wiki page for the ''cpo'' genes. Please feel free to record here any relevant information about these genes that is not recorded elsewhere on Xenbase. =nomenclature updates= 16APR2026 ''Xenopus'' gene symbol has been updated from ''LOC100490370'' to ''cpo'', as it's orthologous to human GeneID: 130749 CPO by BLASTp and synteny.")
  • 14:17, 15 April 2026 Xenbase talk contribs created page XB-FEAT-29078798 (Created page with "= ''c1h9orf40'' = This is the Community wiki page for the ''Xenopus'' ''c1h9orf40'' genes. Please feel free to record here anything relevant to this gene that is not recorded elsewhere on Xenbase. =nomenclature changes= 14APR2026 ''Xenopus'' gene name and symbol was updated from ''LOC100487522, uncharacterized LOC100487522'' to ''c1h9orf40, chromosome 1 C9orf40 homolog'' based on by BLASTp and synteny matching it to its human ortholog C9orf40.")
  • 20:20, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29097866 (Created page with "= ''zdhhc15bl'' = This is the community wiki page for the gene ''zdhhc15bl'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature updates= 13APR2026 ''Xenopus'' gene name was changed from ''LOC116412032, palmitoyltransferase ZDHHC15B-like'' to ''zdhhc15bl, zDHHC palmitoyltransferase 15b like''.")
  • 20:08, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29093414 (Created page with "=''prh1l''= This is the community wiki page for the gene ''prh1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 13APr2026 ''Xenopus'' gene symbol was updated, from teh uninformative ''LOC116407831'' to ''prh1l'', following nomenclature rules, where teh frog gene name and symbol follow that of human. As this gene was already characterized as the 'proline-rich protein HaeIII...")
  • 19:55, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29086774 (Created page with " =nomenclature changes= 13APR2026 ''Xenopus '' gene name was updated , changing from. ''LOC101733183, uncharacterized to naif1l, nuclear apoptosis inducing factor 1 like'', following assessment of the protein in EggNog5.0, which matched the domain(s) of this previous uncharacterized pc gene to 105 NAIF1 proteins in 103 species, with relatively high confidence, thus it may possibly have a "regulation of mitochondrial membrane permeability involved in apoptotic process"...")
  • 17:38, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29228601 (Created page with " =nomenclature updates= 13APRIL2026 ''Xenopus'' gene names was changed from ''LOC100490622, 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase'' to ''hsd3b4l, hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4 like''. this change helps the databse computationally, by elimaintein gthe --> cjharacters, and is based on the protein matching >2000 protein in >400 species ( accession FASTA compared in EggNog5.0). This gene/protein is definat...")
  • 15:34, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29096542 (Created page with "=''prkcql''= This is the community wiki page for the gene ''prkcql'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 13APR2026 ''Xenopus gene symbol was changed from LOC116410894 to ''prkcql'' follwoing human nomencalture for thus gene/protein. Note that orthology has not been assessed, and there are more ''prkcql'' genes in ''Xenopus'' which seem to be tandem duplicates. H...")
  • 15:20, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29086970 (Created page with " =''bix1.4''= This is the community wiki page for the gene ''bix1.4'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 13APR2026 ''Xenopus'' gene named was updated, changing from ''LOC101733442, homeobox protein Mix.1'' to ''bix1.4, brachyury-inducible homeobox 1, gene 4''.")
  • 14:47, 13 April 2026 Xenbase talk contribs created page XB-FEAT-29096982 (Created page with "=bix1.7= =nomenclature changes= 13APR2026 ''Xenopus'' gene names was updated, changing from ''LOC116411062, homeobox protein Mix.1-like'' to ''bix1.7, brachyury-inducible homeobox 1, gene 7''. This gene is part of a 7-gene expansion of six genes in X. tropicalis, an dis not found in the v10 assembly for X.laevis.L ot X. laevis S sub genomes. Despite its previous name , it is not amex or mixer gene. See simple synteny maps for clarifcation of conserved gene order.")
  • 19:27, 8 April 2026 Xenbase talk contribs created page XB-FEAT-29080682 (Created page with "=''nat16.2''= =nomenlcature changes= 08APR2026 ''Xenopus'' gene names where updated from ''LOC100491420, probable N-acetyltransferase 16'' to ''nat16.2, N-acetyltransferase 16 gene 2''. Note that the NCBI/Entrez gene ID for the ''X. laevis nat16.2.L'' gene has to be re-issued as it is currently assigned the same gene ID at the adjacent ''nat16.L'' (N-acetyltransferase 16 gene 1) loci (Entrez Gene: 121393059)")
  • 20:27, 31 March 2026 Xenbase talk contribs created page XB-FEAT-29085686 (Created page with "==''vtcn1l''== This is the Xenbase wiki page for ''vtcn1l'' genes. Please feel free to record here anything relevant to these genes not recorded elsewhere on Xenbase. ==nomenclature updates== 31MAR2026 ''Xenopus ''gene symbol was chnaged from the very uninformative LOC to ''vtcn1l''.")
  • 18:56, 31 March 2026 Xenbase talk contribs created page XB-FEAT-29089658 (Created page with "==''p2rx7l''== Thsi is teh Xenbase communnity wiki page for the ''p2rx7l'' genes. Please recorde here any relevant information about these genes thatis not found elsewhere on Xenbase. ==nomenlcature updates== 30MAR2026 ''Xenopus'' gene symbol and gene name was changed from ''LOC105947618, P2X purinoceptor 7'' to ''p2rx7l, P2X purinoceptor 7 like''.")
  • 18:49, 31 March 2026 Xenbase talk contribs created page XB-FEAT-29097850 (Created page with "==LOC116412020== This is the Xenbase wiki page for Xenopus LOC116412020 genes. Please feel free to record here and relevant information about LOC116412020 that is not recorded elsewhere on Xenbase. ==nomenlcature updates== 30MAR2026. The gene name was changed from ''uncharacterised LOC116412020'' to ''VWFD domain-containing protein like'' following the domain analysis shown on Uniprot for accession A0A8J1JWX9. ==annotation notes== This is an extremely long protein,...")
  • 15:54, 30 March 2026 Xenbase talk contribs created page XB-FEAT-29095014 (Created page with "==''nodal5.5''== ==nomenclature updates== 30MAR2026 ''Xenopus'' gene name changed from ''LOC116409495, nodal homolog 2-A-like'' to ''nodal5.5, nodal homolog 5, gene 5'' follwowing assessemnt fo teh nodal genes in ''Xenopus''.")
  • 15:38, 30 March 2026 Xenbase talk contribs created page XB-FEAT-29087622 (Created page with "==''nodal5.4''== This is the Xenbase wiki page for ''Xenopus nodal5.4'' gene(s). Please fee free to record here any relevant information about ''nodal5.4'' that is not found elsewhere on Xenbase. ==nomenclature updates== 30MAAR2026 ''Xenopus'' gene name was changed from ''LOC101734231, nodal homolog 2-A'' to ''nodal5.4, nodal homolog 5, gene 4'' following synteny and phylogenetic analysis of the ''Xenopus nodal'' genes.")
  • 15:28, 30 March 2026 Xenbase talk contribs created page XB-FEAT-29087578 (Created page with "==nodal5.3= =nomenlcature uopdates= 30MAR2026 ''X.tropicalis'' gene name for ''LOC101734157, nodal homolog 2-A'' was changed to ''nodal5.3, nodal homolog 5, gene 3'' following phylogenetic and synteny analysis by Xenbase.")
  • 14:52, 30 March 2026 Xenbase talk contribs created page XB-FEAT-29228609 (Created page with "==''nodal3.3''== This is the community wiki page for the gene ''nodal3.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.")
  • 15:31, 27 March 2026 Xenbase talk contribs created page XB-FEAT-29098238 (Created page with "=nomenlcature updates= 27MAR2026 The gene name and gene symbol of the these ''Xenopus'' genes have been updated, changing from ''LOC116412198, uncharacterized LOC116412198'' to ''cxc17, C-X-C motif chemokine ligand 17'', following a published study which identified on mutilple amphibian cxc17 orthologs. See: Yu J, Li HZ, Wang JJ, Yao JJ, Hu WF, Liu YL, Guo ZY. ''Identification and functional characterization of CXCL17 orthologs in amphibians.'' Arch Biochem Biophys. 2...")
  • 20:36, 24 March 2026 VG talk contribs created page File:20260324 xret 2026 - slider.png
  • 20:36, 24 March 2026 VG talk contribs uploaded File:20260324 xret 2026 - slider.png
  • 18:41, 20 March 2026 VG talk contribs created page File:20260320 spatial mapping of kidney development - slider.png
  • 18:41, 20 March 2026 VG talk contribs uploaded File:20260320 spatial mapping of kidney development - slider.png
  • 18:07, 20 March 2026 Nxr1 talk contribs created page File:NXR-SingleCellBioinfo2026-tentative schedule-2025 12-38-.pdf (Bioinformatics Workshop_NXR 2026)
  • 18:07, 20 March 2026 Nxr1 talk contribs uploaded File:NXR-SingleCellBioinfo2026-tentative schedule-2025 12-38-.pdf (Bioinformatics Workshop_NXR 2026)
  • 18:04, 20 March 2026 Nxr1 talk contribs created page NXR Workshops & Meetings (Created page with "=== Xenopus Bioinformatics Workshop === '''Next Workshop:''' April 18-25, 2026 '''Course principles:''' BioInformatics Workshop for Xenopus Researchers: I am pleased to announce that the NXR Bioinformatics workshop will be held next year, from April 18, 2026 (Sat) to April 25, 2026 (Sat). The tentative schedule for the workshop can be downloaded below. This time, we have changed the workshop format to a wet-dry-hybrid exercise, specifically emphasizing single-cell ana...")
  • 16:44, 20 March 2026 Nxr1 talk contribs created page NXR Recent Media Mentions (Created page with "==Recent NXR Media Mentions==")
  • 15:44, 20 March 2026 Nxr1 talk contribs created page File:Xlaevis 1438.jpg
  • 15:44, 20 March 2026 Nxr1 talk contribs uploaded File:Xlaevis 1438.jpg
  • 00:44, 19 March 2026 Schu talk contribs created page NXR Preprints (Created page with "test")
  • 00:38, 19 March 2026 User account Nxr2 talk contribs was created by Schu talk contribs and password was sent by email (Account for NXR curator)
  • 00:37, 19 March 2026 User account Nxr1 talk contribs was created by Schu talk contribs and password was sent by email (Account for NXR curator)
  • 16:09, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096350 (Created page with "==''prkcdl.5''== This is the Xenbase wiki page for the ''prkcdl.5 Xenopus'' genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. ==nomenclature updates== 17MAR2026 In the annotation of v10 ''X. tropicalis'' genome assembly, there are 6 tandemly repeated gene models for 'protein kinase C delta type' like genes. These genes sit on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream....")
  • 16:05, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096066 (Created page with "==''prkcdl.4''== This is the Xenbase wiki page for the ''prkcdl.4 Xenopus'' genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. ==nomenclature updates== 17MAR2026 In the annotation of v10 ''X. tropicalis'' genome assembly, there are 6 tandemly repeated gene models for 'protein kinase C delta type' like genes. These genes sit on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream....")
  • 16:00, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096310 (Created page with "=''prkcdl.3''== This is the Xenbase wiki page for the ''prkcdl.3 Xenopus'' genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. ==nomenclature updates== 17MAR2026 In the annotation of v10 ''X. tropicalis'' genome assembly, there are 6 tandemly repeated gene models for 'protein kinase C delta type' like genes. These genes sit on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream. W...")
  • 15:55, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096062 (Created page with "==''prkcdl.6''== This is the Xenbase wiki page for the ''prkcdl.6'' Xenopus genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. ==nomenclature updates== 17MAR2026 In the annotation of v10 X. tropicalis genome assembly, there are 6 tandemly repeated gene models for a 'protein kinase C delta type' like genes. These genes lie on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream. We...")
  • 15:52, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096314 (Created page with "==''prkcdl.2''== This is the Xenbase wiki page for the ''prkcdl.2'' Xenopus genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. ==nomenclature updates== 17MAR2026 In the annotation of v10 X. tropicalis genome assembly, there are 6 tandemly repeated gene models for a 'protein kinase C delta type' like genes. These genes lie on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream. W...")
  • 15:44, 17 March 2026 Xenbase talk contribs created page MediaWiki:Licenses (Created page with "- CC BY-NC 4.0")
  • 15:42, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29096070 (Created page with "==''prkcdl''== This is the Xenbase wiki page for the ''prkcdl'' Xenopus genes. Please feel free to add here any relevant information about these genes that is not recorded elsewhere on Xenbase. =nomenclature updates= 17MAR2026 In the annotation of v10 X. tropicalis genome assembly, there are 6 tandemly repeated gene models for a 'protein kinase C delta type' like genes. These genes lie on Chr4 between ''lmo2''< upstream, and ''abtb2''> ''nat10''< downstream. File:X...")
  • 13:42, 17 March 2026 Xenbase talk contribs created page XB-FEAT-29080690 (Created page with "=''fcar''= This is the Xenbase community wiki page for the ''Xenopus'' ''fcar'' genes. Please record here any relevent information not found elsewhere on Xenbase. =nomenclature updates= 03.17.2026 ''Xenopus'' gene name was updated from ''LOC100491437 uncharacterised'' to ''fcar, Fc alpha receptor'' nabased on synteny and homology group of the Xenopus protein sequences, matching teh cd98 clade in ~90 species. Note the CD89 has recently been renamed in Human, changing...")
  • 00:06, 14 March 2026 Schu talk contribs created page Workshops & Meetings (Created page with "'''NXR Workshops & Meetings'''")
  • 22:39, 12 March 2026 Schu talk contribs created page The National Xenopus Resource - NXR (Created page with "'''The National Xenopus Resource - NXR''' *Workshops & Meetings *Recent Media Mentions *Pre-print Papers related to NXR")
  • 16:49, 12 March 2026 VG talk contribs created page File:20260312 santa cruz dev bio - poster.png
  • 16:49, 12 March 2026 VG talk contribs uploaded File:20260312 santa cruz dev bio - poster.png
  • 16:48, 12 March 2026 VG talk contribs created page File:20260312 santa cruz dev bio - slider.png
  • 16:48, 12 March 2026 VG talk contribs uploaded File:20260312 santa cruz dev bio - slider.png
  • 23:10, 10 March 2026 User account Ioskupli talk contribs was created by Xenbase talk contribs
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