XB-FEAT-22064334: Difference between revisions

From XenWiki
Jump to navigation Jump to search
 
(3 intermediate revisions by the same user not shown)
Line 16: Line 16:
TMEM145> MEGF8> '''CNFN'''< LIPE< (NB: no duplicates)
TMEM145> MEGF8> '''CNFN'''< LIPE< (NB: no duplicates)


'''''X. laevis'''''
'''Mouse'''
Tmem145>  Megf8>  '''Cnfn'''< Lipe<  Cxcl17<


tmem145.L>  megf8.L>  '''cnfn.4.L<  cnfn.3.L<'''  cnfn.L<  cnfn.2.L<
'''''X. laevis'''''  tmem145.L>  megf8.L>  '''cnfn.4.L<  cnfn.3.L<'''  cnfn.L<  cnfn.2.L<


'''''X. tropicalis'''''
'''''X. tropicalis''''' tmem145>  megf8>  '''cnfn.4<  cnfn.3<'''  cnfn<  cnfn.2<
tmem145>  megf8>  '''cnfn.4<  cnfn.3<'''  cnfn<  cnfn.2<


=synteny  notes=


''X. tropicalis'' Chr7: tmem145> ... megf8> ... '''cnfn.4< ... cnfn.3< .. cnfn.1< ... cnfn2<''' ...
Note the orthology is a many:1 relationship with ''Xenopus'':human
 
''X. laevis'' Chr7.L: tmem145.L> ... megf8.L> ... '''cnfn.4.L < ... cnfn3.L< ... cnfn.1.L< ... cnfn.2.L'''< ...
 
''X. laevis'' Chr7.S: tmem145.S> .... megf8.S> ... '''cnfn.1.S< ... < cnfn.2.S'''
 
Mouse              Chr7: Tmem145> .... Megf8> ... '''Cnfn'''< ...Lipe< ... Cxcl17<
 
Human Chr19:              TMEM145> .... MEGF8> ... '''CNFN'''< ...LIPE< ... CXCL17<
 
 
Note the orthology is a many:1 relationship with Xenopus:human

Latest revision as of 13:39, 4 February 2025

cnfn.4

This is the community wiki page for the gene cnfn.4 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

nomenlcature changes

05FEb2025

to conform with Xenopus naming guidelines for duplicated genes, GeneID: 108696708 is henceforth recognized as cnfn.3.L, while GeneID:108696707 /LOC108696707,  which did not have an official nomenclature/ has been assigned cnfn.4.L.


Note that the left-right order for numbering the cnfn genes was not strictly followed to mainatain stable identifiers for gene models from earlier genome annotations (i.e. cnfn.1 and cnfn.2)

Synteny

human   TMEM145> MEGF8> CNFN< LIPE< (NB: no duplicates)

Mouse Tmem145> Megf8> Cnfn< Lipe< Cxcl17<

X. laevis tmem145.L>  megf8.L>  cnfn.4.L<  cnfn.3.L<  cnfn.L<  cnfn.2.L<

X. tropicalis tmem145>  megf8>  cnfn.4<  cnfn.3<  cnfn<  cnfn.2<


Note the orthology is a many:1 relationship with Xenopus:human