XB-FEAT-6035279: Difference between revisions
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=cerkl= | =''cerkl''= | ||
This is the community wiki page for the gene ''cerkl'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''cerkl'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=synteny= | |||
Note that there are 3 ''ceramide kinase'' and ''ceramide kinase like'' gene in ''Xenopus''. | |||
1) TRUE CERK ORTHOLOGS, confirmed by synteny are on Car 3/3L/3S '''''cerk''''' on XB-GENEPAGE-960159 | |||
Human [Gene ID: 64781,]: GRAM4D> '''CERK'''< TBC1D22A> | |||
''X. tropicalis'' [Gene ID: 100487080] is on Chr. 3: ''tafa5< tbc1d22a< LOC116409743< '''cerk>''' gramd4< celsr1>'' | |||
''X. laevis'' chr3L: [Gene ID: 444656 ] ''tafa5.L< LOC121401507< tbc1d22a.L< '''cerk.L>''' gramd4.L< celsr1.L>'' | |||
''X. laevis'' chr3S: [Gene ID: 444466] : ''tafa5.L< LOC121402074(ncRNA)< '''cerk.S>''' gramd4.S< celsr1.S>'' | |||
2) THE TRUE CERKL ORTHOLOG, '''''cerkl''''' are on chromosome 9/9_10L/9_10S on XB-GENEPAGE-6035279 | |||
Human: ITGA4> '''CERKL'''< NEUROD1< | |||
Xtrop chr9 [Gene ID: 100487761]: ''ppp1r1c< ltprid2< LOC#> neurod1> '''cerkl'''> ltga4< ube2e3< '' | |||
Xla chr9_10L [gene ID:108701398 ]: ''ppp1r1c.L < ltprid2.L> neurod1.L> '''cerkl.L'''> ltga4.L< ube2e3a.L<'' | |||
Xla chr9_10S [gene ID:108702273]: '' ppp1r1c.S < ltprid2.S> ncRNA< neurod1.S> '''LOC108702273/cerkl.S'''> ltga4.S< ube2e3a.S<'' | |||
3) There is a 2nd '''cerkl''' gene, hereafter called ''cerkl2'', on ''Xenopus'' chromosome 8/8L8S, displayed on XB-GENEPAGE-5892679. | |||
Synonyms include:LOC108704494, XB5892679, loc779592 | |||
No similar gene is seen in Human using the flanking genes as anchors, so no orthologs are currently listed. | |||
HUMAN CHRMX: SLC10A3< FAM3A< G6PD< IKBKG> FAM223A> ATF4P2>CTAG1/2/3 GAB3 < | |||
( no cerk- like) | |||
‘’X. tropicalis’’ chr 8 [GeneID:779592]: ''eeig1> LOC116406742< slc10a3< fam3a< ‘’’XB5892679>’’’ g6pg< lkbkg> sephs3<'' | |||
‘’X. laevis’’ chr8L [GeneID:108704494]: ''invs.L< sephs3.L> ikbkg.L< g6pd.L> ‘’’XB5892679.L’’’< fam3a.L> slac10a3.L> '' | |||
''X. laevis'' chr8S v9.01: ''invs.S< g6pd.S> lkbkg.S< '''loc779592.S'''<. fam3a.S> slc10a3.S>'' | |||
''X. laevis'' chr8S v10 [GeneID:108699970]: ''g6pd.S> '''LOC108699970'''< fam3a.S> LOC121397548(p3protein-like)> ncRNA> eeig1.S<'' | |||
Revision as of 14:48, 4 March 2024
cerkl
This is the community wiki page for the gene cerkl please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
synteny
Note that there are 3 ceramide kinase and ceramide kinase like gene in Xenopus.
1) TRUE CERK ORTHOLOGS, confirmed by synteny are on Car 3/3L/3S cerk on XB-GENEPAGE-960159
Human [Gene ID: 64781,]: GRAM4D> CERK< TBC1D22A>
X. tropicalis [Gene ID: 100487080] is on Chr. 3: tafa5< tbc1d22a< LOC116409743< cerk> gramd4< celsr1>
X. laevis chr3L: [Gene ID: 444656 ] tafa5.L< LOC121401507< tbc1d22a.L< cerk.L> gramd4.L< celsr1.L>
X. laevis chr3S: [Gene ID: 444466] : tafa5.L< LOC121402074(ncRNA)< cerk.S> gramd4.S< celsr1.S>
2) THE TRUE CERKL ORTHOLOG, cerkl are on chromosome 9/9_10L/9_10S on XB-GENEPAGE-6035279
Human: ITGA4> CERKL< NEUROD1<
Xtrop chr9 [Gene ID: 100487761]: ppp1r1c< ltprid2< LOC#> neurod1> cerkl> ltga4< ube2e3<
Xla chr9_10L [gene ID:108701398 ]: ppp1r1c.L < ltprid2.L> neurod1.L> cerkl.L> ltga4.L< ube2e3a.L<
Xla chr9_10S [gene ID:108702273]: ppp1r1c.S < ltprid2.S> ncRNA< neurod1.S> LOC108702273/cerkl.S> ltga4.S< ube2e3a.S<
3) There is a 2nd cerkl gene, hereafter called cerkl2, on Xenopus chromosome 8/8L8S, displayed on XB-GENEPAGE-5892679.
Synonyms include:LOC108704494, XB5892679, loc779592
No similar gene is seen in Human using the flanking genes as anchors, so no orthologs are currently listed.
HUMAN CHRMX: SLC10A3< FAM3A< G6PD< IKBKG> FAM223A> ATF4P2>CTAG1/2/3 GAB3 < ( no cerk- like)
‘’X. tropicalis’’ chr 8 [GeneID:779592]: eeig1> LOC116406742< slc10a3< fam3a< ‘’’XB5892679>’’’ g6pg< lkbkg> sephs3<
‘’X. laevis’’ chr8L [GeneID:108704494]: invs.L< sephs3.L> ikbkg.L< g6pd.L> ‘’’XB5892679.L’’’< fam3a.L> slac10a3.L>
X. laevis chr8S v9.01: invs.S< g6pd.S> lkbkg.S< loc779592.S<. fam3a.S> slc10a3.S>
X. laevis chr8S v10 [GeneID:108699970]: g6pd.S> LOC108699970< fam3a.S> LOC121397548(p3protein-like)> ncRNA> eeig1.S<