XB-FEAT-22064334: Difference between revisions

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'''''X. tropicalis'''''
'''''X. tropicalis'''''
tmem145>  megf8>  '''cnfn.4<  cnfn.3<'''  cnfn<  cnfn.2<
tmem145>  megf8>  '''cnfn.4<  cnfn.3<'''  cnfn<  cnfn.2<
=nomenclature changes=
9/14/2021
Based on synteny analysis this gene has been named ''cnfn.4, cornifelin, gene 4''.
It was previously annotated as "LOC100495837: cornifelin homolog" in ''X. tropicalis'', and "LOC108696707 cornifelin homolog A-like" in ''X. laevis''.
Note that the left-right order for numbering the ''cnfn'' genes was not strictly followed to mainatain stable identifiers for gene models from earlier genome annotations (i.e. cnfn.1 and cnfn.2)


=synteny  notes=
=synteny  notes=

Revision as of 13:37, 4 February 2025

cnfn.4

This is the community wiki page for the gene cnfn.4 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

nomenlcature changes

05FEb2025

to conform with Xenopus naming guidelines for duplicated genes, GeneID: 108696708 is henceforth recognized as cnfn.3.L, while GeneID:108696707 /LOC108696707,  which did not have an official nomenclature/ has been assigned cnfn.4.L.

Synteny

human   TMEM145> MEGF8> CNFN< LIPE< (NB: no duplicates)

X. laevis

tmem145.L>  megf8.L>  cnfn.4.L<  cnfn.3.L<  cnfn.L<  cnfn.2.L<

X. tropicalis tmem145>  megf8>  cnfn.4<  cnfn.3<  cnfn<  cnfn.2<

synteny notes

X. tropicalis Chr7: tmem145> ... megf8> ... cnfn.4< ... cnfn.3< .. cnfn.1< ... cnfn2< ...

X. laevis Chr7.L: tmem145.L> ... megf8.L> ... cnfn.4.L < ... cnfn3.L< ... cnfn.1.L< ... cnfn.2.L< ...

X. laevis Chr7.S: tmem145.S> .... megf8.S> ... cnfn.1.S< ... < cnfn.2.S

Mouse Chr7: Tmem145> .... Megf8> ... Cnfn< ...Lipe< ... Cxcl17<

Human Chr19: TMEM145> .... MEGF8> ... CNFN< ...LIPE< ... CXCL17<


Note the orthology is a many:1 relationship with Xenopus:human