XB-FEAT-22064334: Difference between revisions

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=synteny  notes=
=synteny  notes=


''Xenopus'' have 2-4 duplicated copies of the '''cornifelin''' gene in this pattern.  
''X. tropicalis'' Chr7: tmem145> ... megf8> ... '''cnfn.4< ... cnfn.3< .. cnfn.1< ... cnfn2<''' ...


''X. tropicalis'' Chr 7:   megf8> ... '''cnfn.4 ... cnfn.3 .. cnfn.1 ... cnfn2''' ...
''X. laevis'' Chr7.L: tmem145.L> ... megf8.L> ... '''cnfn.4.L < ... cnfn3.L< ... cnfn.1.L< ... cnfn.2.L'''< ...


''X. laevis'' Chr7.L:   tmem145.L> ...'''cnfn.4.L < ... cnfn3.L<  ... cnfn.1.L< ... cnfn.2.L'''<  ...
''X. laevis'' Chr7.S: tmem145.S> .... megf8.S> ... '''cnfn.1.S< ... < cnfn.2.S'''


''X. laevis'' Chr7.S: tmem145.S> .... megf8.S> ... '''cnfn.1.S< ... < cnfn.2.S'''
Mouse              Chr7: Tmem145> .... Megf8> ... '''Cnfn'''< ...Lipe< ... Cxcl17<


Mouse Chr7: Tmem145> .... Megf8> ... '''Cnfn'''< ...Lipe< ... Cxcl17<  
Human Chr19:             TMEM145> .... MEGF8> ... '''CNFN'''< ...LIPE< ... CXCL17<


Human Chr19: TMEM145> .... MEGF8> ... '''CNFN'''< ...LIPE< ... CXCL17<
 
Note the orthology is a many:1 relationahips Xenopus:human

Revision as of 10:14, 6 September 2022

cnfn.4

This is the community wiki page for the gene cnfn.4 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

nomenclature changes

9/14/2021 Based on synteny analysis and applying nomenclature rules for gene names, this gene has been named cnfn.4, cornifelin, gene 4.

It was previously annotated as "LOC100495837: cornifelin homolog" in X. tropicalis, and "LOC108696707 cornifelin homolog A-like" in X. laevis.

synteny notes

X. tropicalis Chr7: tmem145> ... megf8> ... cnfn.4< ... cnfn.3< .. cnfn.1< ... cnfn2< ...

X. laevis Chr7.L: tmem145.L> ... megf8.L> ... cnfn.4.L < ... cnfn3.L< ... cnfn.1.L< ... cnfn.2.L< ...

X. laevis Chr7.S: tmem145.S> .... megf8.S> ... cnfn.1.S< ... < cnfn.2.S

Mouse Chr7: Tmem145> .... Megf8> ... Cnfn< ...Lipe< ... Cxcl17<

Human Chr19: TMEM145> .... MEGF8> ... CNFN< ...LIPE< ... CXCL17<


Note the orthology is a many:1 relationahips Xenopus:human