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  • 06:54, 12 March 2025 ‎XB-FEAT-29082342 (hist | edit) ‎[426 bytes] ‎Xenbase (talk | contribs) (Created page with "=''abcb1l.2''= =nomenclature updtes= 12MARCH2024 To resolve a symbol clash, this gene page has been renamed ''abcb1l.2'' for like, as the protein is very much like the true ''abcb1'' gnes (on chr6, supported by synteny) and to distinguish it from the other ''abacb1l'' genes on chr7. Note that the protein it coeds for is also very similar to ''abcb5'' genes according to homology groups for vertebrates as assessed by EggNog5.0.")
  • 11:23, 10 March 2025 ‎XB-FEAT-29096010 (hist | edit) ‎[1,409 bytes] ‎Xenbase (talk | contribs) (Created page with "=nomenclature updates= from ''LOC116410327, traf2 and NCK-interacting protein kinase-like'', to ''tnik.2 traf2 and NCK-interacting protein kinase like gene 2'' =annotation notes= 10MARCH2025 by CJZ There 3 gene pages in Xenbase with '''tnikl'' 'traf2 and NCK-interacting protein kinase-like'' gene models represented, and 1 with ''tnik'', which synteny supports as teh true orthologs of human TNIK. 1) XB-GENEPAGE-29078838: this page has 3 x v10 models all on chr6/6L/6S,...")
  • 11:21, 10 March 2025 ‎XB-FEAT-29078838 (hist | edit) ‎[1,259 bytes] ‎Xenbase (talk | contribs) (Created page with "=''tnikl''= =annotation notes= 10MARCH2025 by CJZ There 3 gene pages in Xenbase with '''tnikl'' 'traf2 and NCK-interacting protein kinase-like'' gene models represented, and 1 with ''tnik'', which synteny supports as teh true orthologs of human TNIK. 1) XB-GENEPAGE-29078838: this page has 3 x v10 models all on chr6/6L/6S, called ''tnikl, traf2 and NCK-interacting protein kinase-like''. These genes will not be given a new symbol, but renamed gene 1, and the synonym add...")
  • 10:18, 10 March 2025 ‎XB-FEAT-29081646 (hist | edit) ‎[806 bytes] ‎Xenbase (talk | contribs) (Created page with "=''spaca5l''= This is the community wiki page for the gene ''spaca5l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclaure updates= 10MARCH2025 ''Xenopus'' gene symbol and gene name changed from ''spaca5-like.1, lysozyme C'' ( which seems incorrect from the get go) to ''spaca5l, spaca5 like gene 1''")
  • 09:13, 10 March 2025 ‎XB-FEAT-29092902 (hist | edit) ‎[290 bytes] ‎Xenbase (talk | contribs) (Created page with "=nomenclature updates= 10MARCH2025 These ''Xenopus'' genes were renamed, changing from ''LOC116407644 and LOC108702353, RING finger protein 112-like'', to ''rnf112.3, RING finger protein 112 gene 3''. this is siupported by multi-user alignment, phylogram and synteny. CJZ")
  • 09:04, 10 March 2025 ‎XB-FEAT-29090062 (hist | edit) ‎[541 bytes] ‎Xenbase (talk | contribs) (Created page with "=''rnf112.5''= This is the community wiki page for the gene ''rnf112.5'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature changes= 10MARCH2025 This ''X. tropicalis'' gene was renamed, changing from ''LOC105948499, RING finger protein 112-like'' to ''rnf112.5, RING finger protein 112 gene 5'' This was following an assessment of the ''rnf112'' genes in ''X. tropicalis'' and ''X. laevis''...")
  • 08:39, 10 March 2025 ‎XB-FEAT-29090058 (hist | edit) ‎[266 bytes] ‎Xenbase (talk | contribs) (Created page with "=''rnf112.6''= =nomeclature changes= 10MAR2025 ''Xenopus'' gene named updated, changing from ''LOC105948498 , RING finger protein 112-like'' to ''rnf112.6, RING finger protein 112 gene 6''. This supported by protein alignment, rnf112 phylogeny and synteny. -CJZ")
  • 13:48, 7 March 2025 ‎XB-FEAT-29092562 (hist | edit) ‎[693 bytes] ‎Christina (talk | contribs) (Created page with "=''spaca5''= =nomenclature updates= 06MARCH2025 There are 4 genes annotated as 'spaca5' or 'spaca5l' in the v10 Xenopus genome assemblies. Synteny supports this X. tropicalis gene, on Chr8, GENEID as the true ortholog of the human SPACA5 gene. The names of the spaca5 genes on chr10/9_10L will be changed to 'spaca5-like' genes 1 and 2. ''Xenopus'' gene name has been changed from ''sperm acrosome associated 5 like'' to ''sperm acrosome associated 5'', aka ''sperm acros...")
  • 13:33, 4 March 2025 ‎XB-FEAT-29093946 (hist | edit) ‎[338 bytes] ‎Xenbase (talk | contribs) (Created page with "=''retn.3''= =nomenclature updates= 04/03/2025 Xenopus gene names updated , changing from ''LOC116408250 resistin-like beta'' to ''retn.3 resistin, gene 3''.")
  • 12:53, 4 March 2025 ‎XB-FEAT-6465554 (hist | edit) ‎[601 bytes] ‎Xenbase (talk | contribs) (Created page with "=''relt''= This is the community wiki page for the gene ''relt'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =annotation notes= There were 2 separate gene models on unplaced scaffolds in the v9.1 ''X. tropicalis'' genome assembly, both being assigned to different gene pages and enter/NCBI Ids on Xenbase. To reconlile the Xtrop models, I have moved them both to a single XB-gene-ID , supporting...")
  • 12:29, 4 March 2025 ‎XB-FEAT-22060540 (hist | edit) ‎[535 bytes] ‎Xenbase (talk | contribs) (Created page with "=nomenclature updates= 03MARCH2025 ''Xenopus'' gene name has changed from ''polr3e, polymerase (RNA) III (DNA directed) polypeptide E (80kD) gene1 (sic)'' to ''polr3e.2, polymerase (RNA) III (DNA directed) polypeptide E (80kD) gene 2''. This is supported by synteny as the duplicated gene pair '' eef2k + polr3e'' in ''X tropicalis'' only.")
  • 12:14, 4 March 2025 ‎XB-FEAT-29090010 (hist | edit) ‎[483 bytes] ‎Xenbase (talk | contribs) (Created page with "=''eef2k.2''= This is the community wiki page for the gene ''eef2k.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature updates= ''Xenopus'' gene name changed from ''LOC105948368, eukaryotic elongation factor 2 kinase-like'' to ''eef2k.2, eukaryotic elongation factor 2 kinase gene 2''. Synteny pattern supports a duplication of the ''eef2k + polr3e'' genes (chr9) as a pair in ''X. trop...")
  • 11:20, 4 March 2025 ‎XB-FEAT-29078478 (hist | edit) ‎[398 bytes] ‎Xenbase (talk | contribs) (Created page with "=''phka2l''= This is the community wiki page for the gene ''phka2l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.")
  • 12:20, 3 March 2025 ‎XB-FEAT-29091266 (hist | edit) ‎[534 bytes] ‎Xenbase (talk | contribs) (Created page with "=''parp14.3''= This is the community wiki page for the gene ''parp14.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.")
  • 11:57, 3 March 2025 ‎XB-FEAT-29081974 (hist | edit) ‎[812 bytes] ‎Xenbase (talk | contribs) (Created page with "=''plscr1''= This is the community wiki page for the gene ''plscr1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =Summary for human PLSCR1 - phospholipid scramblase 1- from NCBI= This gene encodes a phospholipid scramblase family member. The encoded protein is involved in disruption of the asymmetrical distribution of phospholipids between the inner and outer leaflets of the plasma membrane, r...")
  • 08:31, 3 March 2025 ‎XB-FEAT-17329856 (hist | edit) ‎[1,147 bytes] ‎Xenbase (talk | contribs) (Created page with "=''fcrl4''= =summary from NCBi for human FCRL4= FCRL4 - Fc receptor like 4 This gene encodes a member of the immunoglobulin receptor superfamily and is one of several Fc receptor-like glycoproteins clustered on the long arm of chromosome 1. The encoded protein has four extracellular C2-type immunoglobulin domains, a transmembrane domain and a cytoplasmic domain that contains three immune-receptor tyrosine-based inhibitory motifs. This protein may play a role in the fun...")
  • 14:40, 26 February 2025 ‎XB-FEAT-29079302 (hist | edit) ‎[586 bytes] ‎Xenbase (talk | contribs) (Created page with "=XB29079302= =nomenclature changes= 25FEB2025 gene name has been updated from 'LOC100488610' (which only covers the Xtrop genes=) to XB29079302, to include the ''X.laevis'' genes. BLAST and synteny support these genes as homologs/homeologs on chr1/1L/1S. Functional characterization of teh Xtrop protein in Eggnog, matches >15,000 proteins, of which 172 seqs are from Xenopus. FUnctionally, this protein is a identified as involved in GO:MFs Post-translational modificat...")
  • 14:16, 26 February 2025 ‎XB-FEAT-29078278 (hist | edit) ‎[539 bytes] ‎Xenbase (talk | contribs) (Created page with "=nomenclature updates= 25FEB2025 Genes on this gene page are recongised as homologs/homeologs by reciporal BLAST and synteny, however they remain uncharacterized and have no identifiable EggNog homology groups, and thus, sadly, remain unnamed. I have updated the genepage name to XB# instead of the ''X. tropicalis'' LOC100486289.")
  • 13:46, 26 February 2025 ‎XB-FEAT-29088338 (hist | edit) ‎[565 bytes] ‎Xenbase (talk | contribs) (Created page with " =nomenlcature updates= 25FEB2025 I applied the gene symbol ''larg4l'' to the characterized genes called ''large neutral amino acids transporter small subunit 4-like'' by NCBIs. This is probably a bit too cheeky and preemptive/presumptive, as these genes all still carry LOC#s in other taxa, but hey, we r trying to give meaning symbols to as many genes as possible. -CJZ")
  • 13:20, 26 February 2025 ‎XB-FEAT-29087698 (hist | edit) ‎[536 bytes] ‎Xenbase (talk | contribs) (Created page with "=''apobr''= This is the community wiki page for the gene ''apobr'' please feel free to add any information that is relevant to these genes that is not already captured elsewhere in Xenbase. =nomenclature updates= 25FEB2025 Gene name and symbol has bee updated, from 'uncharacterized LOC101734336' to ''apobr, apolipoprotein B receptor''. This is based on protein alignment between ''Xenopus'' loci, the Xtrop protein sequence ( 939aa) matching the APOBR homology group in D...")
  • 09:21, 26 February 2025 ‎XB-FEAT-29077418 (hist | edit) ‎[510 bytes] ‎Xenbase (talk | contribs) (Created page with "=''fxr1l''= This is the community wiki page for the gene ''fxr1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 26FEB2025 The gene name & symbol have been updated, changing from uncharacterized LOC100124775 to ''fxr1l'', as refs protein matches the true ''fxr1'' gene group with high confidence ( using eggnog5.0) , yet this gene is on chr7, while true ''fxr1'' are on chr5...")
  • 09:12, 26 February 2025 ‎XB-FEAT-29077410 (hist | edit) ‎[483 bytes] ‎Xenbase (talk | contribs) (Created page with "=''fetubl''= This is the community wiki page for the gene ''fetubl'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes 26FEB2025 This gene symbol changed from LOC to ''fetubl'' after quick review. the protein sequence matches the fetab homology group in EggNogg 5.o, yet the true fetab genes are on chr5, thus the like designation. -CJZ")
  • 15:16, 25 February 2025 ‎XB-FEAT-29094062 (hist | edit) ‎[1,067 bytes] ‎Xenbase (talk | contribs) (Created page with "=''siglec15''= This is the community wiki page for the gene ''siglec15'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. =nomenclature changes= 25FEB2025 Following recommendation from NCBIs RefSeq ( see RSCOM-705 XB-GENE-920159 (siglec15) and XB-GENE-29094063 (LOC116408355)), the name of this gene has changed from ''LOC116408355'' to ''sialic acid binding Ig like lectin 15 like''. RefSeq Curators...")
  • 11:31, 21 February 2025 ‎XB-FEAT-29089670 (hist | edit) ‎[2,282 bytes] ‎Xenbase (talk | contribs) (Created page with "=parp14l.2= =nomenclature changes= 21FEB2025 following review by David Webb at NCBI, RSCOM-838 XB-GENEPAGE-29091266 and XB-GENEPAGE-6458584 both named ''parp14.3'', synteny for these genes and symbol clash with ''parp14'' genes on Chr1, the following notes and changes have been made. RSCOM-838 XB-GENEPAGE-29091266 and XB-GENEPAGE-6458584 both named parp14.3 2 Xenbase genepage's with identical parp14.3 symbols but distinct gene names: XB-GENEPAGE-29091266/'protein mon...")
  • 10:25, 11 February 2025 ‎XB-FEAT-6469131 (hist | edit) ‎[371 bytes] ‎Xenbase (talk | contribs) (Created page with "= ''ciroz'' = This is the Xenbase wiki page for ''Xenopus ciroz’’ genes. Please feel to record here any information that is not represented elsewhere on Xenbase. =nomenclature changes= 11FEB2025 ''Xenopus'' gene nomnlcature has chnged, from ''c7h1orf127, chromosome 7 C1orf127 homolog'', to ''ciroz, ciliated left-right organizer protein containing ZP-N domains''")
  • 09:53, 6 February 2025 ‎XB-FEAT-29077542 (hist | edit) ‎[1,061 bytes] ‎Xenbase (talk | contribs) (Created page with "=''nek2''= This is the Xenbase wiki page for ''Xenopus nek2’’ genes. Please feel to record here any information that is not represented elsewhere on Xenbase. =nomenclature changes= 06FEB2025 RSCOM-691 Nomenclature for LOC100328980 and nek2 Can you please take a look at LOC100328980 (GeneID:100328980 , XB-GENE-29077543) and assign it appropriate nomenclature? Synteny and protein similarity to the human NP_002488.1 suggests that this is the ortholog of human NEK2....")
  • 09:20, 5 February 2025 ‎XB-FEAT-29093426 (hist | edit) ‎[987 bytes] ‎Xenbase (talk | contribs) (Created page with "=''tmem198''= This is the Xenbase wiki page for ''Xenopus tmem198'' genes. Please feel to record here any information that is not represented elsewhere on Xenbase. =nomenclature changes= 05FEB2025 Following assessment by RefSeq Communications. RSCOM-684 XB-GENE-29093427 (Gene Symbol: LOC116407834; Gene Name: transmembrane protein 198) is associated with GeneID 116407834, which is the ortholog of human GeneID 130612, TMEM198. This is supported by synteny. X. tropical...")
  • 08:46, 5 February 2025 ‎XB-FEAT-29077994 (hist | edit) ‎[589 bytes] ‎Xenbase (talk | contribs) (Created page with "=''gpat3''= This is the Xenbase wiki page for ''gpat3''. Please feel free to record here any information about these Xenopus genes that are not recorded elsewhere.")
  • 12:37, 4 February 2025 ‎XB-FEAT-29082318 (hist | edit) ‎[1,967 bytes] ‎Xenbase (talk | contribs) (Created page with "=''lonrf4''= This is the Xenbase community wiki page for the X''enopus lonrf4'' genes. Please feel free to record here any inofrmation about these genes that is not captured elsewhere on Xenbase. = nomenclature changes= 05FEB2025 following an anlysis by ZFIN and NCBIs refSeq team, XB-GENE-29082319 was renamed. Changing from LOC100494722, to ''lonrf4''. Xenopus ''lonrf4''is orthologous to zebrafish GeneID: 560773 ( ZDB-GENE-101021-4) whose name has recently been upd...")
  • 07:51, 8 January 2025 ‎XB-FEAT-22041598 (hist | edit) ‎[427 bytes] ‎Xenbase (talk | contribs) (Created page with "=''cgl.2''= This is the Xenbase wiki for the cgi.2 genes. records here anyinofrmation that is relevant to these genes that is not recorded elsewhere om Xenbase. =annotation notes= Note that Choi et al 2024, in PNAS article, refer to ''cgl.2.L'' as an ortholog of Human ITLN2 Intelectin-2 see( table S2)")
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